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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033992 Open in IMG/M |
| Scaffold ID | Ga0334992_0009156 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6685 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (30.77%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001338 | Metagenome / Metatranscriptome | 719 | Y |
| F002038 | Metagenome / Metatranscriptome | 600 | Y |
| F004790 | Metagenome / Metatranscriptome | 423 | Y |
| F068833 | Metagenome | 124 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334992_0009156_2040_2480 | F001338 | N/A | MTTENDRPPLTSISTNGTYKLKLIKPKFEKVKQWEDGTTSCRLFFVDDKGFCLSKNFSSKYGKALAMLVGKFSGKYTNEIRLDATPAEYMQYLEPACGQTILVGVEVEANGEWQGKPQYKYKMTYPRGSQKPTAPEEPLPPEGVPF |
| Ga0334992_0009156_3075_3380 | F004790 | GGA | MNPETLRWANKVGLSPDRVAFLLACPKYTRTGRNDRPAFIKTENPNHHLQKLGDCYWFRLRRRGKDIVENIASDLETARKRRDEMLAAFDAGKPIPYINIR |
| Ga0334992_0009156_317_565 | F002038 | N/A | MSEVPKGIERIAATVPRQYALLLFLDGFPYVEFTARKHADFLTDLNAWKRKTYPSLSRSNVRFFTLAPNGEIKELTFTPVRS |
| Ga0334992_0009156_6471_6683 | F068833 | N/A | VTRARLNDLTAPAKEAKSFDAWFFAQPKKVQEKMRENGVLPYAEMAQPRHVFNIDANHPDWAFNPTDIGRR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |