NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0009162

Scaffold Ga0334992_0009162


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0009162 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6683
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (6.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012345Metagenome281Y
F029371Metagenome / Metatranscriptome188Y
F059779Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0009162_2262_2408F012345N/AMRFKLTYEIGLAVVQEWIFTSKSLAYWKKMDLIESGRFNDGKFKVTPL
Ga0334992_0009162_4499_4801F059779N/AMDLGLHKIKTGVNLWAIKKRIQNARENILKTRPEAIEYIKGAEQSEEELLEAISFLTNLYEHAVSISRENTILANRNIELTRIKNELENQIKFNQIENEL
Ga0334992_0009162_4798_5055F029371N/AMTKTKKLVALTAFLPVLADFIEDLNDQYVFKQGLKRKANMLAEEIQRVDREILRIDGENAGKIFDEQIQLQILFRQWIDEVIELD
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