NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0019658

Scaffold Ga0334992_0019658


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0019658 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4209
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F001460Metagenome / Metatranscriptome690Y
F013184Metagenome / Metatranscriptome273Y

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0019658_2430_2591F000441N/AMMRRKKMKMSDEYINDQLSKAQALLWGGSETENIEAHNIISKLIRDRVEQISN
Ga0334992_0019658_3097_3384F000263AGAAGGMTPEDIGLPPHLQRLINYDINGLDIMHGELKNLMLIWEKELEKAQAIEDETEEAMDSMERKYCEGFLDALTALYKLTYDLSFAIGVREENKKDGH
Ga0334992_0019658_3762_3944F001460GGAGMLGYTESDLNRMINAVHDAKLFYLRTPSDLMDKQPLRKDLEDAVSFLQGLWAEGYFDHTN
Ga0334992_0019658_3938_4111F013184GAGGMRSYDFVIKLAGSVSANNEEEAHEKINLHLDDLGAVDSLRYDLEWPDVSWDMEYELC
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