NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0026885

Scaffold Ga0334992_0026885


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0026885 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3483
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019119Metagenome / Metatranscriptome231N
F037129Metagenome / Metatranscriptome168Y
F048842Metagenome / Metatranscriptome147Y
F096912Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0026885_1707_1889F037129N/AMMSVNKKDYKIVEETHGFVTKYVVKKKVFWIFWKTVKNNAGFDMQYDTKRAAQSYINFLK
Ga0334992_0026885_1_222F096912N/AMFTVKLVKRDGKLVYPDDKSKLNYQIFLDKLPEGQQVEVFMGITSDDGSVAQLAKVHACIRELAKESGYTFDEM
Ga0334992_0026885_2722_2925F048842N/AMKNKAGVVLITLLPIILWGLAIFGEVRCIYKMCTCNWEPVGKAEIVYTVGTFTGAGVVIGYFDIEDK
Ga0334992_0026885_376_789F019119AGGMETDIRKEMEALSAQIAEEHYNITDGVDQNLHYLWYMYHKGSKAGMFRPFVYMAELQLLKRMDYINDTEIKNMIRMLESEDQDNLHMVTLSIKNFRNLRLEEHGEYSKVNQAYWKIAKNYAHEILNHEIFMQTMAAK
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