NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0173246

Scaffold Ga0334992_0173246


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0173246 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1092
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070861Metagenome / Metatranscriptome122N
F074380Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0173246_12_476F070861N/AVRCSFLLVSRYEQYQTFGKVNGLRGVPRGVTQLCITNIQSEFYMYLKFNPRASEIFTARIVPNEFYPFHVLLLYISAYNIYIDRPLTLFNLCLAQAFSMGYNSQNVTPFHAPLTVRRQLYFPIRRTIRFIDSAGDINYSCTQCAVEAYNFNIDV
Ga0334992_0173246_510_1040F074380N/AMSSVFHSTIGPMHNFHQTLPEDCRCLHVTVIGCGSGLSLYFRGQEKNTSFVMPLFEGLQSVCTSGSRYSLSTWWTGGVSLHSFEWLPTAYPAGHYALRFVYRRPYDGELPKLSTYCWSVVHSMLLDKYLPLSTRRADPSGPHRHSVLYVEYSVTYERQPTCTPTSCAYYEWCRQQL
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