NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0175459

Scaffold Ga0334992_0175459


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0175459 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1083
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019478Metagenome229Y
F036239Metagenome / Metatranscriptome170Y
F053288Metagenome141N

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0175459_319_822F036239N/AMKIKGWEKISGFTYKGYCIVNPIHDANEEVYYATVLNLNQVYRPKWDMVLSAYAVKGVVKFSILDNITQHLLAKAHLTKVNIETPQKFREQYEMLVDDILEEAQSYVKKATTNINGGTTGIINQVQNAGTNFTYKSGSISITNNIQAAAIQALQTLQQQIDDYNKKL
Ga0334992_0175459_3_266F019478N/ATEFWNGRFRCLQVHETDTNYRFQFDDSEVPSRYVWIEVSKIGRIDNEGDWSYSLNYMRCNQHLVTAKWFENWKNVTKTFGDALKKQF
Ga0334992_0175459_800_1081F053288N/AMITIKNYNSDVGHATFYGWDMKYALEDKDFYSFEFEHRNEQKRVYVLVHRNKLKSKKRAAASPKIGDLHEVYIQDMVGDRWRRTVNLEKRSLNK
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