NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334994_0000147

Scaffold Ga0334994_0000147


Overview

Basic Information
Taxon OID3300033993 Open in IMG/M
Scaffold IDGa0334994_0000147 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46416
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (77.19%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000340Metagenome / Metatranscriptome1267Y
F000346Metagenome / Metatranscriptome1253Y
F003471Metagenome / Metatranscriptome485Y

Sequences

Protein IDFamilyRBSSequence
Ga0334994_0000147_19085_19342F000340AGTAGGMGWADVLKAVIPIIVAALAWVLGQVSSANERLVKVEAAMPALITKEGTPTDSPLSAERRAAMKEELKREISDLHVRVMLLEQLKK
Ga0334994_0000147_30053_30202F003471AGAAGGMAITTYRQPKPVPINGNSGYPNNVANTQTLKTRGTGAATKGTNSSKKMG
Ga0334994_0000147_30203_30385F000346AGGAGMAKSDIKQDKGMVKAAVHKHEKGMHPGKPLTKLAKGGKTNMQMKTLGRGLAKVANQKKGT
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