NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334994_0005158

Scaffold Ga0334994_0005158


Overview

Basic Information
Taxon OID3300033993 Open in IMG/M
Scaffold IDGa0334994_0005158 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9193
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017294Metagenome / Metatranscriptome241Y
F053890Metagenome / Metatranscriptome140Y
F070855Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0334994_0005158_5324_5566F017294GGAMWASQQPNQQGADMANQMHLDKSGTGFTSRTACGRNILRTPMSTDWENFKMEAPAYRCIKCVASKQFEVNTRMDARKAAA
Ga0334994_0005158_5606_5749F070855AGGAMKHHKYHQHYQVKASKLHACAEAALDLITALVVGIGLAACLFYGWSA
Ga0334994_0005158_7929_9191F053890N/ALKKDNLTPTEAQQALDELRKIGVPNPVIADLGKSLNDLAYSAYVVQSKAKGSTESFLVNRMIDQPNDIVKGLVEKAGLAKNVNGFEYLESLTANQARLASQAYPDAYRIAVDATPFRKYVDRPVFQKAYEEAVKRAGVYGNTLPDLSAIRNAQSVPTDILHQIKIGLDRVVDAETDSVTTKISGYGRDVVKVKNEFNDLIKSLNPQYAKANAEFADAERIKNAFKMGEDYQRLDPAEAVSKIRKLNLDEKEAFRLGVMADVNNRIGNFKGGDFTKQIFKSENQKLLLRNAFPDQASYTEFSQYVKGLGQQSATKQRILGGSRTAENLSVQGDANLLGSLAQATATGDPLSMLRAGGQALLSRAKGISSETSEALQKRLFTVDPIEQTTILRELNRRAQRPQTGLLTGAAAVGSATGMLGN
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