NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334994_0054353

Scaffold Ga0334994_0054353


Overview

Basic Information
Taxon OID3300033993 Open in IMG/M
Scaffold IDGa0334994_0054353 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2486
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006740Metagenome365Y
F057944Metagenome135N
F060707Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0334994_0054353_494_643F006740GGAGMPTFESWSQENLAKFAQESYIKLQEQQDYIEQLQNDLKDAINAYRTLIK
Ga0334994_0054353_640_849F057944AGGAMMKKEVDDNHPTVRMFSRTMQEAWPKDYVNEDIFTGPYREPQISDFAILCALIAIVWFFFYMFTKYIWS
Ga0334994_0054353_851_1081F060707GGAGMRKPIGITYPLRILTETPEEAEVFSAMEQSSVRKEAIRNPTKEAKLVAEVAVLSELVRVLSDRVTELETKYEKTTN
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