NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0000002

Scaffold Ga0334996_0000002


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0000002 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)181461
Total Scaffold Genes282 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)56 (19.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068814Metagenome124Y
F105164Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0000002_150424_151011F105164N/AMASSKNTTKFKLMGITFELPSACLRTTNYWGEPLTNPTITIGRKEVPLMFKQFMKVKYPNMLVWGKSSTFANGSSSDLYACNADGSELEYGTKEYYDIASFCNMFKGGHYDGMHDCYEYAENGKSDNGTELEFNAKYVSFNGKAPFGTWPEAKRSLRDMLDGKYVWGVLTLEKAIEKLKGYSYTEATIAKAVASL
Ga0334996_0000002_91582_92064F068814N/AMKPHESLMVKSVVSFMMDKYNFTAKIIIKKKDKAGMIGDISLNSNSVDGNKFYLHFNPNQSYKRIIQSMIHELTHVKQVSKNELLPNKDYTAILWKGKEYITAKDYGKLMKSDIQTYMKLPWEVEANGNMNSLYSTFIGSKHWKELKGKDDTMDYIIDNI
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