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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033994 Open in IMG/M |
| Scaffold ID | Ga0334996_0000003 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 172253 |
| Total Scaffold Genes | 236 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 126 (53.39%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004208 | Metagenome / Metatranscriptome | 448 | Y |
| F024768 | Metagenome / Metatranscriptome | 204 | Y |
| F034149 | Metagenome / Metatranscriptome | 175 | Y |
| F038911 | Metagenome / Metatranscriptome | 165 | Y |
| F055721 | Metagenome / Metatranscriptome | 138 | Y |
| F080645 | Metagenome / Metatranscriptome | 115 | Y |
| F101046 | Metagenome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334996_0000003_100605_101195 | F034149 | GGA | MTLSQGLVDQENEEAGFEIIHLSFRKRLSESMYGGPVNYYIGNIVFRLTDPDAINRMKYYMEENEELRVAPDLELMEKYYEGLHFVFEKPEHAILTDDIPEEERYVPLDIRNKHGIKDEDVFIHAHRRNTAPLHDFIQYNEKFNCYRMHEYFQDTPVVRGIIQYLQDMKDGKPNPSRTVYHEQFINTLENLCWWWD |
| Ga0334996_0000003_15703_15981 | F080645 | N/A | MDITTQQVSELLQAHCYRVIDNMSSDDLFSYAMQMMIQSFDQNPGQGDTDVDMLIEDIWVAEGEDEDSVQEFIAGVFGDALLAEEIVKSTQF |
| Ga0334996_0000003_166143_166328 | F038911 | GAGG | MVEKVKFVTVTRVIDDRAGIHYLDAVDVNGYHWSAEMDSKQEKWLVYNKVWTRDPQQPYD |
| Ga0334996_0000003_168250_168546 | F004208 | GAGG | MTYKLNEEANAFSYTREELFECITRIVAHPHKTITEHDQSRALAIMVVFDDYFTNYTQSDNNGGHCVYECDAMDFTDFVRFKLCIDDYDAVDVNEVLK |
| Ga0334996_0000003_169369_169671 | F101046 | GGAG | MQLSYGNDLLLEAAELRAIIKGELGFRKCPDCQGDGESWTLHYVLKDDPDQSNEQFKEVSAQYAADFDEDNLPPEYSWGECHLYECDTCHSVGYIPVEQW |
| Ga0334996_0000003_169665_169946 | F024768 | GGA | MVMNYETEIIDGRRVVVRHFFKAHEIQVGSRWARADGSKGFVTVEGFNTYGATDPWIEVVYSWELNGEKFIHEKDAFAFQCRYCLIVEETNEI |
| Ga0334996_0000003_171916_172164 | F055721 | N/A | MNKEEYYKYIEENDTYPEHSHKWIVRTYTDAGIHNPNEVFYRNFGPFNTKDEAVLFIGGYKMKYTTQGFITRWTVQALCEVL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |