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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033994 Open in IMG/M |
| Scaffold ID | Ga0334996_0001568 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15455 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (80.77%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000403 | Metagenome / Metatranscriptome | 1177 | Y |
| F003134 | Metagenome / Metatranscriptome | 505 | Y |
| F009503 | Metagenome / Metatranscriptome | 317 | Y |
| F012452 | Metagenome | 280 | Y |
| F025683 | Metagenome / Metatranscriptome | 200 | Y |
| F090378 | Metagenome / Metatranscriptome | 108 | Y |
| F105039 | Metagenome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334996_0001568_4762_4923 | F009503 | GAGG | MEQVQFECRICKKVTRQLVHKITDNLPHGVEVIQCTKCEVMGVAQIGGTDADV |
| Ga0334996_0001568_4904_5353 | F105039 | N/A | MVAAVKITSDKGQLLDLPRSYNNSSFMIYLSELAESIGSEWAVAKYFGLPFDPFEDKGKRKADVGAGIEVRWTKYELGQLIVYEYDRPTDIAVLVTGEAPNYYIAGWIPVTMAQKPRYRHTKQPTWWVTQINLQPIENLRKSNYGTSAI |
| Ga0334996_0001568_5389_5601 | F000403 | AGG | VGRAFAMSDYMEMIDVKTMTCKLLCNGEVIAEYKVEQCDKCSQITKLDSFGYQKGYDKHEKVIWFCGGCR |
| Ga0334996_0001568_5580_6251 | F012452 | AGGTGG | MAFLDNYEGNKERTDRWNLTYPEGRLQAHIVEFNADKGYILVQAKAWRNQTEIEPAGIDYAYGFIAAYNPNMKRWFVEDTTTSALMRVMALVMGGTEKATRETMEQVEKLSTKVATADVKADYDYWTTKHGDVPSYATAAEAEQSGIPSLGSSIDEIANQLGGQLIEEKPRCEHGTRVWKTGESAKTGKAWGGYFCTEKAKANQCEPVWYQLGSTGQWVVRLP |
| Ga0334996_0001568_6251_6424 | F025683 | GGAG | MVLDLLDPETLGRLVGVIFLMVLGGAAGYAKGFKEGKREGMARRKAISRHMSNKVVD |
| Ga0334996_0001568_7983_8114 | F090378 | GGCGG | MVLRYADTRTITFGAGLTGTESSASGGYKRATITAGTGNVSWA |
| Ga0334996_0001568_9426_10682 | F003134 | GGTGG | MTQWSPVWKVLLDGVEYTDAVLANLTIRSGRTNIYEQAQAGYVNLQLLDVNQVAVPVNINSTISVQVQDTTGTYVPIFGGNVVDIALEVRDIGTTMFTQTYSITALGALARLPKVIYTDALARDFDGDQIYEILSGVLYNTWAQVAPSVTWAGYTPAGTTWATAENNGLGEIDRPGNYDLAARGSGQDPIDVYSLVSALATSGLGYIYEDAQGRIGYADSTHRTNYLAANGYVDLDANHARAAGLRIETRVGDVRNAITIKYGTTSQNDVSDSDPASIALYGNLAQIITTTLHDAADANAQAAFYLSLRAQPQPIFSEISFDLTNPEIDNSDRNNLINVFMGEAIALNNLPLNMSSGTFQGFVEGWSFQASYNRLSVTLLLSPLAYSLQAMRWNDVPITETWASVSPTLDWANATIVA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |