NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0001624

Scaffold Ga0334996_0001624


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0001624 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15265
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005530Metagenome / Metatranscriptome397Y
F006893Metagenome362Y
F013525Metagenome / Metatranscriptome270Y
F024771Metagenome204N
F031868Metagenome181N

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0001624_10600_10827F031868AGGAGMKTVKEEIERLVLESEKNPHIVQTYFEYYYALLDHSNLTLDEFFKLYPQYDVEKTESLYWKQFMKQWKEIWTDKA
Ga0334996_0001624_13469_13735F006893AGAAGGMEILTISESCQKILCNNKLYKDIDFFEVPHNKVCLAVIRAISNKSYNEIGKAYKKSWFSIYSSVKDCQKNGLKSFTNKVIDLVKEDLK
Ga0334996_0001624_5548_5838F005530GAGMANYIVTTIDPDFTPETHTVGASSVQSGVITTGSGLVRISTTTHCHIKFGANPTATEEDFLMPSDHVEVFAFKSGQKIAFIAHGGGSGEINICAVD
Ga0334996_0001624_7700_8239F024771AGTAGMNDKKYIKDFNHQSYEVRSTNYLSITESRFTDYCTMRGYLYKKLGLNSVNDSQNFSESVIPLYRHLPTFFKGYPDFFIYKSKEEHEKSDNKEKCQWFVELKNATYEQGKTLAKIKVRDLKRYIYFEQGYTNQWTRFTICFPLADKIIFKSVDQILKLLPKSQLKSFPNDGIEYFEVQLN
Ga0334996_0001624_8240_8578F013525AGGAMIQLSQKNPDEIKAELDSISEEMSEALYEFRRCEMFLKITFSQIALTYKMEKNCSVAEADKLAFADSKYAVIVEGLLYAEKKYTLLKSKYSNLLVFCDLWRSYMATNRELSR
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