NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0011414

Scaffold Ga0334996_0011414


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0011414 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5897
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Microbacterium phage Shocker(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031446Metagenome / Metatranscriptome182Y
F081085Metagenome / Metatranscriptome114Y
F103043Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0011414_1880_2458F031446GGAGVSKLEPDDYEDAWIASNFALYEPHQDDYTVIEIDKRGVGRPMSEPSDITDIVSTGRKRAAMMYPIFKDMKCEWAGLKFAGGGVEPIIGCYGSVIQPTKGPDKGDRHHGPDKNVINNAPDNVHRICSTCHNRWHALNNKYYGPRPPADEPFTPLPEYKWQAHDTSTKASDEEIADNETWWATKHKLLANVDTE
Ga0334996_0011414_4502_4714F081085GGAGGMIDDEFDDPNELWVDDLYDMDEAQLRREVEQYARLARRYPHPTSRHNMAYQFAYLRHSEAMKILEARSNA
Ga0334996_0011414_4707_5147F103043GGAMSPSKETLVLFTLAIANTALTIGDIAFRSKVSYNTVKKVVLSDERVSSVGNHPTMYYMAKPDVLDEQIVRLTGDTPKEGWVTWIGKISAKLPDFVRIDKARLSDDVRKQGMVLEALGVNLILFGRTLQEHADKPDWFTLIGGNEND
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