NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0013587

Scaffold Ga0334996_0013587


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0013587 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5377
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047683Metagenome149N
F054874Metagenome / Metatranscriptome139Y
F101159Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0013587_1098_1403F047683AGGAMTLTIEQIESTYNAPAEGLANSYYPVLAYWIPIEKLEEVRAAYRASDTTIRIRYRGPRTVSVGREMSRPDKTTYTRSYHRAMQDCLIADATHFTVYDYTAR
Ga0334996_0013587_2046_2465F101159N/AMMMKGNTDMLTLRDINAVTKSKDGCIFSDLYKDVYGTRPSADYRFESIDAFDADFQYLSAKLDRKIEQEAAEQASNFLKFTARVAATMYLVKNATRESAIEIIAEAEGIRKEQFDFYGLEILENELNLKYGSIARWLSE
Ga0334996_0013587_732_905F054874GGAGMPNEAKGGTFAPADMPLIKNALFCYKDMLVKSEESERNVSEELSKVAALLHRINRIA
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