NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0027903

Scaffold Ga0334996_0027903


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0027903 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3629
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium caldaquaticum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082584Metagenome / Metatranscriptome113Y
F087098Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0027903_2106_2393F087098N/AMSNPTIQIAARSSSGIVQPVLATPDGALRVTTGFPLPLYDAFSIVRVGSTNNTDYTQYSFGGTAVARVKVTYFGGTPTTDNASISGSFIQFPPFA
Ga0334996_0027903_236_604F082584N/AMATVLKLLRSTVPGRVPTAAQVAQGQLALNLPDRRLYSKDHNNEVFRIARPRDPSDYQLLHAADGNHLYLGRLAWADFPASGPAEDSTAWTIYKITTNSAGDVLSEQSATGQWSSKQSLTYS
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