NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0048780

Scaffold Ga0334996_0048780


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0048780 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2637
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021298Metagenome / Metatranscriptome219Y
F031070Metagenome / Metatranscriptome183Y
F031856Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0048780_2014_2172F031070GGAMKALKNRRRGPYWNFWRVILAGWIIRYPKTMSRVILLPLGFLIILIYNAIVK
Ga0334996_0048780_2391_2531F021298N/AMSKTVMLSLLAQGNTGSEILQILDTLTEDNQQSIAYAEPTADVIEF
Ga0334996_0048780_812_961F031856N/AMKKFNVLYNGRKIYKDLSAEECTEVLQELSERFYSDEEFDLSLIEMEEI

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