NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0138022

Scaffold Ga0334996_0138022


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0138022 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1372
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F001460Metagenome / Metatranscriptome690Y
F084239Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0138022_330_608F000263AGGMNMTAEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQDLATALEQEALSEEAMDSMVRTECEGRLDMLVELYNLTYQLSFAIGARDEA
Ga0334996_0138022_608_805F084239GGAGGMTTPTKSSRFMEYLKIHLISLEQDLEQIDYVNGHHFYRVKEAEIANTRHILSVATDIMNDNERVY
Ga0334996_0138022_789_971F001460GGAGMLGYTESDLNRMINAIHDAKLFYLRTPSDLMDKTELRNDLEMAVSFMQGLWAEGYFDHTD
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