NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0389431

Scaffold Ga0334996_0389431


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0389431 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)658
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022399Metagenome214Y
F053253Metagenome141Y
F084156Metagenome / Metatranscriptome112N
F093851Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0389431_1_243F022399N/AYSKNGLEVFVNIDDYWADYKVNLNGHHAKKFYGETAWMDVTRFVHDQAMEFWDFDVDGIHRQWKTDLIEEIEKRFTDAGI
Ga0334996_0389431_230_397F093851GAGGMQEYKYLDTDLDDMIYALDSVLTTINSDDDPWLYNNTWRAIELLKGLKVKGFGND
Ga0334996_0389431_390_557F084156AGGAMTDLCWYDTKQGDNCQWECSDIPGQFYCKNCNGLRVWNRFAQAYSFYVREGHYGF
Ga0334996_0389431_547_657F053253GAGGMDFDLDTPIEKILADMLDKVEGHVGDCDCVNCNSLEV
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