Scaffold Ga0335003_0011182

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335003_0011182

Scaffold Ga0335003_0011182

Overview

Basic Information
Taxon OID	3300033995 Open in IMG/M
Scaffold ID	Ga0335003_0011182 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4702
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013755	Metagenome / Metatranscriptome	268	Y
F016253	Metagenome / Metatranscriptome	248	Y
F058715	Metagenome	134	N
F059002	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335003_0011182_2722_2997	F059002	N/A	MNILNEIKNGISRLLGVHKTLETKETPKTLKPKRTAKRGRGRPKGLKIPRAIVDAVLQADKSISNKQLAAKYRVSCFWIWSVRSKKLRLKR
Ga0335003_0011182_3164_3424	F058715	GGA	VAGGKTVSLLEKLGLTKQSMERMLGAVAPLKKTKIKRYRRYETVPADIRKAILGEHSSYTCRELAKKYGISSSTIWDIRDSKSKTE
Ga0335003_0011182_3403_3576	F013755	AGGAGG	MSDTPISDSTPHNVAELGILCRRLERLAAVRLAYITQLETENDAMRADLLLWREAKP
Ga0335003_0011182_4057_4212	F016253	AGGAG	MSDRMQSIIKEGTGVYSISKKEAGEIHKAAKKVKNYAVSYWTRNRKNKEVK

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