NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335003_0035398

Scaffold Ga0335003_0035398


Overview

Basic Information
Taxon OID3300033995 Open in IMG/M
Scaffold IDGa0335003_0035398 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2695
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010916Metagenome / Metatranscriptome297Y
F037728Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0335003_0035398_157_486F037728N/AMDEMYSDFFEVKHCSDSGDKYIIGLGIRNVVSFKQWGPKYYKMSINKVTNEDGNYGIWLWDVGENISYPMSIDRDSLSNSSAFTSFLNHTLKLANNGDFSGDVGNRIDN
Ga0335003_0035398_1843_2139F010916N/AMNVKDISEQIKVDLMDMVRRHDWSYMMSDDMRAFEQGSRAEKLICEKLHILIAIHREDAEALYNEVKDLAGTDYTDYDSKGRGLKYRVIDVWFKPYMF
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