Scaffold Ga0334979

Basic Information
Taxon OID	3300033996 Open in IMG/M
Scaffold ID	Ga0334979_0000150 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033996 Open in IMG/M

Scaffold ID

Ga0334979_0000150 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	55768
Total Scaffold Genes	76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (32.89%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

55768

Total Scaffold Genes

76 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (32.89%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F015061	Metagenome / Metatranscriptome	257	Y
F021128	Metagenome	220	N
F023326	Metagenome	210	Y
F058252	Metagenome	135	N
F097170	Metagenome	104	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000150_20677_22533	F097170	N/A	MPAEGSVFDGFTSIVAQDASTHPSYLSEFYVSESVNRTFRGGINRTRPSIRNINIVAGENQIETIVNDIQTGNFQGAYPYRRTTYESADGIVISVSGVIYFLKIVNNVAYAYRLPVPNGWTWNDGSLMHTFFVQAEDQLYIQNGYQNPIAWNGDLNTNAVRLNPFNREMPIGTIMEYAFGRVFVSDKFNQIYASDIIYGNGFTDTTNTRRFTEITYWELGGAFSTPSMMGNITGMKVMPELGLNLRGQGQLVVLTGNGAFAMDVSIPRSQWNTTNIQRISLLGRGCTSPYLALVNSELWFRSHDGWAFYSNTQSEFNRYFSLRKLSKEVNKWVERDTPWLRQFASTVFYDNYLISTVAPQISRTSAPGLHRYHRGMIALDLDQSASPAPDAQLTFRWNGLWTGIRPTQMLSALIAGQKRGFAFSFDKDNKNRLYEITSEQTDDYGPNGTRKIESFFTTGRYDFNRSGATNKFLRKRITGGEMWMSEIKGEVESSVEFRADSNPCWSELKVPTTFGCNPCSPVVTECVPQRGGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIKINLTGAATVDRVRLMANIKNNDDSPVGDCPEENQECEPFSCCQEKYWEYNIVN
Ga0334979_0000150_2432_2809	F021128	AGG	MKLKNKNLAPVGGWYFRYEIKRDNLTFPAIVYGSTWSGLMQNIQKDYRSNGVELPANIEQMVEDQICQRQPSDRCWYSDGLGDTIAQAIHTVAAVTDRVLGTKLEHKARGCSSCNRRRNALNSLS
Ga0334979_0000150_39444_39725	F015061	AGGA	MSEPTPQNETSKAVLEAFTFIKSADETLNERVHAMSSLLHTAAMMVIKSESRKGEGFEAIKYLELAFMYYQNSQFRKRFDKEEEKEEAPRIIT
Ga0334979_0000150_542_2395	F023326	N/A	MSRVFSSSKGIRRYGIQFPENMDDLGIELYCYAISRGEYGKDYCNKQNINLSDFKLLSPHEHFINAVKLQWPTEVSIYNRGYTNTQLLRTLEELCNNTDICLAGAASMGKSFPVGLWVYLDWCAAPHCTSSWVATTTLGASEDRIWGIISKLWKCARVQFGKLIDYRHMIVWGGASNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRVRLALDELPEMELGAITAKVNLSANNDVTFIGIGNPSAGDNPHTRWAMPKGASNFDSVSPDMDKWETETGVCLFYNGMRSPNFAAPANEPSPFPFLMDRKKQEIMLKQCYGDENAIDYVRNAIGWWPKSGFAQTILTADLIRNADTNEEPLWDSEGFTKVAGFDTAFTVGGDRCVLTIAKLGYVRGTRNRVMWLEDQKIIQLSANAAAEFEIQLATEVVGFCRTAGVQPSKFGMDVSGDGGRVGQAIIREWLRFDAGGAAIALISSMGKPTDRIAAEVDKRPCKDVYDRLVSEYYYSLYHAFKSRVIFGVDPASDLARELCLRRYTIKSKKIAIETKDELKGRTGYSPDLSDSLVYALEMARRNGLVFIGNDKPVPTNRFWARDEKPVESFSDDDAYSSDDNGDW
Ga0334979_0000150_55577_55768	F058252	N/A	MTTSNTFESRIICEGVEVTNTLEKILFRQKFNQCWVKKKDIRLHETLGYLDGEKVVRIVVPEEV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334979_0000150

Overview

Ecosystem & Geography

Associated Families

Sequences