NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0000330

Scaffold Ga0334979_0000330


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0000330 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37490
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (28.57%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014513Metagenome262Y
F021128Metagenome220N
F023326Metagenome210Y
F025268Metagenome / Metatranscriptome202N
F075040Metagenome119Y
F097609Metagenome104Y
F101028Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0000330_1127_2980F023326N/AMSRVFSSNKGIRRYGIQFPENMDDLGIELYCYAISRGEYGKDYCNKQKINLSDFKLLSPSEHFLNAVKLQWPTEVSIYNRGYTNTQLLRTLDELCSNTDICLAGCASAGKSFPVGLWVYLDWCSAPHCTSSWVATTTLGASEDRIWGIISKLYKCARVQIGKLIDYRHMIVWGGATNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRVRLALDELPEMELGAITAKVNLSANNDVTFIGIGNPSAGDNPHTRWAMPKDQSNFDSVSPDMDKWETGTGVCLFYNGMRSPNFAAPANEPSPFPFLMDRKKQEIMLKQCYGDENAIDYVRNAIGWWPKSGFAQTIITADLIRNADTNEEPLWDSEGFTKIAGFDTAFTVGGDRCVLTIAKLGFVRGTRNRVMWLESQKVIQLSANAAAEFEIQLATEVVSLCRAAGVQPSKFGMDVSGDGGRVGQAIIREWLRFDASGVAIALISSMGKPTDRIAADVDKRPCKDVYDRLVSEFYYSAYHAFKSRVLFGIDPASDLARELCLRRYTIKSKKISIETKDELKGRTGYSPDISDSLIYCLEMARRNGLVFIGNDKPVPTNRFWARDEKPVESFSDDDAYSSDDNGDW
Ga0334979_0000330_19606_21612F101028N/AMPAEGSVFDGFTSIIAQDADTHPSYLPESVVSESVNRTFRGGINRTRPSIRNISIIAGDGQTETIVNDILGGSFQGAYPYRSTNLRTNDGILLSVSGIIYFLKMVNNRAFAYKIIEGNDPGMMHTWFVQAEDRAYIQNGYQNAIAWDGVLGTLTASEIQNGDYCEIVSVGTTNFTLIGAPSNTIGVKFTAVITDTQRGTGTGTVKLPAYRLNPYLAKMPIGTIMEYAFGRVFVADRLNQIYASDIIYGGGFTDTKNTENFTEIGYWAEGGAFSTPAMMGNITGMKVMPQIGTNLRGQGELVVLTGNGAFSMDVSLPRSQWNTSNIQRISLLGRGCTSPYLGLANSELWFRSHDGWAFYSNSQSEFARYFSLRKLSREVNKWVENDTPWLKQFASTMFFDNYIISTVSPQTYRAEGVEGLNRYHRGMVVLDLDQSSSPAPDAQLSFRWNGIWTGIRPTQLLTALIQGEKRGFGFSFDKDNKNRLYEFTIAQGDDYGPNGSRQIESFFTTGRYDFNRSGATNKFLRKKITGGEMWMSEIKGEVDSYVDFRADSNPCWSELKVPTTFGCDPCSPKVTECFPQRGGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIKVNLTGAATVDRVRLMANIKNNDDSPVGDCPEENQECEPFLCCQEKYWNYNIVN
Ga0334979_0000330_22330_23292F014513GGAMADTLEEMVEVVKGFVGDSGVCSYERAVKAVNQARRLLWNKKAWSSQEEYVQICCVDNCFTLPSRYEQIKLAWIGNDSASLADEWFNATNAFALHADHSCHRGIIEVGGLHVLFRDYTTHPYQIGVMAEEAEDIGVELMFEAQDQYDTYHKVKVTTANPPTLAKSDLLVKGIRAVSKPVTKGRIRVYAYDTALEAKTLIAIYQPNDANPTFRRFKAPRTCECITLYASKKYFDLTDPKELCEFVPDAMIYAVLALNSRENRKAQEFMANLALAVQEQEKEMGGYEIPTAAPIRFSNYSRAENLIGSDLLSPSPNDYFLYR
Ga0334979_0000330_3005_3394F021128N/AMKGKMKLKNKNLAPVGGWYFRYEIKRDKLTFPAIVYGSTWSSLMQNIQKDYRSNGVELPSNIEQMVEDQTCQRQPSDRCWYSDGLGDKIAQAIHTVAAVTDKVLGTKLEHKARGCSSCNKRRNVLNSLS
Ga0334979_0000330_33870_34118F075040N/AMEKNLIMKETPTVKKEAAEKSEATYNMKLEPDIQLEIYLRLVSAAASDGRFLLGNLPNAQAVVKQGDHLKGVAEILATCYQK
Ga0334979_0000330_35405_36223F097609N/AMSNQLDGLEPKDIIKKVTGKITKLFPEKQHEGNYGPYTIQNGEIEVDGKAYKLAFWKNTQPESAKGRTVTLSSTRGKHGMNGVTFEEESYKNKEGQQIHNQVIKATASAKVEYDGASEEPVRRTETPKSIVTDNPEKALDEIVEMHQYIDSLVRMAYLGKITDEETLRSYVSSVFIEANRKGIHYSSKIEAPKKEEPAEEETNPEDWGSVIVPSGSHKGKKLAEIGKPALTKLYEFYLDKGFNTPFAKCVEKAAEDLNLDAPAGEEEDNIPW
Ga0334979_0000330_7753_9162F025268N/AMSDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQAWPLNHTTEQKAFRFGRGFHDPCAPFRQITDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGAGHKWMGITTDDGTYCGLVDDQAWFVPEHTLNNEAGYDLCAIRVKLAPADLNKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINAARFNADTAFNAGLATFNAADPATWARLVRVPRYIKTVLENGCAYIPNRAYRTADFGVSVAMVNKAMCKWTMPSSTGYGQAQQMTQNYAGDWEWKNPDWECNRWRKSGFYQAQFRLAAQVKDPTIMHTFLHRMPQSKNLYGSCCPVQSYIVPENNQDCYSCAGVGDIVVPS
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