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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033996 Open in IMG/M |
| Scaffold ID | Ga0334979_0000442 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 31733 |
| Total Scaffold Genes | 50 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (22.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F038642 | Metagenome | 165 | N |
| F060834 | Metagenome | 132 | Y |
| F063618 | Metagenome | 129 | N |
| F065741 | Metagenome | 127 | N |
| F085402 | Metagenome | 111 | Y |
| F099218 | Metagenome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334979_0000442_17334_17927 | F063618 | N/A | MKLPKNWNEISIAQFQELQLLTEPSFDNQLKTLSILSNKKLDTIEEMRIVDITAALAKLAFMAELPTAKNVGSFRIGNTLYKFAANQHHLQAHQFIMVQDLFAEKDKWVQNLHMIMAALCVPYRIFPPKRKEVKTDDFEKIAAQFRERMPISFAYAYTLFFSLCLPQLLEATQVYLEQEVEKLKKIADEKTDQPSVG |
| Ga0334979_0000442_1745_2023 | F085402 | AGGAG | VATEKQTETGQTHEVSEQTQVSKTIPRTRKMKLKNYFQPTPKRFRVLGDSIAAASLFVAGLNLDHPKLMLISGVCGAVGKFVTNFFAEDEKK |
| Ga0334979_0000442_19011_20207 | F065741 | N/A | MAITINTEPNDVAPVYSDVSYVVTSTNYAQANFKFIAVIKNASGTTIAKLKAPIFHGTTDKGVFNISRILQNYVTYDFTQNLTAISKCNNSYLAYSVEFGEEYGGTEYLNLASDTGKYVWNGLFNLYGSETPDTYKINVTPNSAKFLTRVRPRIVTREQYDYLYFLLLGFNIEPKVIAYNAAGSVIATSYLKLPWTPSTADTSQFMVRFGAGVVQLNALTAGELTSGTPGSVVPVGTAYYTIQFTQTIGGNFSEIYRFDVVEECSKYVPQYLYFLNPLGGFESVRCSMASRDKYSVSRKQFKRNNYTLTGNTFAYDKTKHGMTSYATEKTKQVVLNTNWLNEVEFEWLQDLIASPVVFLGDIPVNITDTNYEVFDYIDGPNNLQITVEYTEPERLQNA |
| Ga0334979_0000442_28553_28930 | F038642 | N/A | MLYITKAGTPELIITGREKVTVSPVYYLLVFESEMSQEQKAFIVTDTSTAPNRYQLFSFVEGSSTAKTLAVGTHYWALYAQTSPSNTNPLLASQEIDRGLAYVTASHTAFNDHEVNTTIKQHHIG |
| Ga0334979_0000442_4602_5006 | F099218 | N/A | MMDIVNLLFDVEEGNASALDAFCHLTRLEKQIKAAKEQIQSQAINEAQMYGKTFQHMGFEIQCRSGAGRWKFDHLDEWSAAKMKMNTIEDLAKWAYKSEEKGVLPVTDDGDIIQPAVYVAGSDTIALKEIGHAE |
| Ga0334979_0000442_6722_6934 | F060834 | N/A | METTKKVNSKELLKHAFNMMMMLKSKAISVEEAKAQSNLLKQSNNLLKYELDRAIAVQKFEHLEIRNIEE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |