Scaffold Ga0334979

Basic Information
Taxon OID	3300033996 Open in IMG/M
Scaffold ID	Ga0334979_0000584 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033996 Open in IMG/M

Scaffold ID

Ga0334979_0000584 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27437
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (31.11%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (36.36%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

27437

Total Scaffold Genes

45 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (31.11%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (36.36%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F005024	Metagenome / Metatranscriptome	414	Y
F006107	Metagenome / Metatranscriptome	381	N
F006262	Metagenome / Metatranscriptome	377	Y
F009147	Metagenome / Metatranscriptome	322	N
F009398	Metagenome / Metatranscriptome	318	N
F010611	Metagenome / Metatranscriptome	301	N
F032255	Metagenome / Metatranscriptome	180	N
F037116	Metagenome / Metatranscriptome	168	N
F050368	Metagenome	145	N
F088293	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000584_13887_14354	F032255	N/A	MANSQGLAYQFGSPASVTMFDTDNATAVFTALASIESYDLTHESDTEEVRNSGGEVVGHIGYNERVTLNLNMIPSGANAAAALAFCSLAPVNGTVSITGAPVIKMMGVADVINSGRFIYAGGGSVKMTQSGKAMVSITVKRFKNLTTAAAVALNV
Ga0334979_0000584_14367_14849	F006107	GGA	MNAVALRAELAVADYLAAANWSASGAGTPTCLTSYSRGLYDDPDDQDVMPNFPRLVVSTNSARPMQRTDLTCEIEIAVELQLSADDTDEAAVLTTVQVLDNRILPLFDDTGASALNAPSNDPSGPFTAQFAAPLDFGASSISNRSRTFTRTFTLYCSATT
Ga0334979_0000584_14846_15643	F005024	GGAG	MTVDSGKFDLAMKQYLLTTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRIADYLGTPVGDINRKSKKTGKRVGTSRILRRVHLIVQAKAAKNPTANLNGGHGLYGKRMKAAASALMKRSIASVGYLRSAVVKSIRIYNRGFTQFQSPKWKPLSKPASYRAPKKTNSALVAMANEYGLPQENVSIHKGTVAHGFQAVPGFNPTAFVSMRTGVADNQYNRVAQIYNEAMQKAMDDETTEMVNHMTEALLANGKVLEDNGISIK
Ga0334979_0000584_15658_16113	F009398	N/A	MTTIGSSLQQGMAVLQQMLGAPMFIWQGTSIRCIPAAVNDANVPISGGFQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLLKEDGLFVLQENSDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYNLELGAKTK
Ga0334979_0000584_17097_17267	F037116	N/A	MEPTNSSTSPGLSLAAAAGATAVSFIPALTDWVRLITALIGLACAIYGAYRLFKSK
Ga0334979_0000584_17267_17416	F001272	N/A	MINIELTQEQANSLLQLIDIAVKAGGVANARAALPLVDLIVSSAQPKSE
Ga0334979_0000584_19022_19282	F009147	N/A	MAVQADISTEYSMGREGFALVTTTAAQTGNWAGLIPTEPTVFTSITGFGISGTWTSKTIPAGFPLVGNITGFQISSGSVVAFLARS
Ga0334979_0000584_23190_23594	F006262	N/A	VFTFTVAIKRAYLRSVYATLGGVTLLAALAAKSIAAATVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLVDDYDLAVYYLEQDGNLTPTDAQIYTKMVGVVLVAATSFGGDFSNFRREASYRGMS
Ga0334979_0000584_26535_27161	F010611	AGGA	MTQKEYGDRIGISQPRVAQLISQGMPMDSPESADLWRSQHVRSRAKSIPKQKNVPDPTAIEQEGPYRPIEAETPLNTATAATDSPEGAYERQRQIERAAYDLAVDALRGGRADAGRLVAIHAAAAKNLTSARDEVITQAEKERRLVSGDWVRRVMQEHDGAVASLIKAMPKQLSGRIAPHDPEHAERELTRWVQEVALKTLHNTDPWK
Ga0334979_0000584_3652_3804	F088293	N/A	LDLPAFADYNDRRQLRAIALDVRKLEDRVKQLEQENDAMRADLLLWREDK
Ga0334979_0000584_5146_5607	F050368	GGA	MINEEEVRRLPLWKDWIERNEHRLAYGLTVTTEEMEAALEEKFGSVEFNMEILNIRMVLRHRGMNFSQRGLRGAGFHIAPPNTNADEMERMNRVAVNSLKASVILGTRTNLNLLSECERKRHEAVTEKMAHRVALLGRTSSSLGQEISKQLTQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334979_0000584

Overview

Ecosystem & Geography

Associated Families

Sequences