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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033996 Open in IMG/M |
| Scaffold ID | Ga0334979_0000761 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 24291 |
| Total Scaffold Genes | 45 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (80.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009529 | Metagenome / Metatranscriptome | 316 | Y |
| F020909 | Metagenome | 221 | Y |
| F024097 | Metagenome / Metatranscriptome | 207 | N |
| F025466 | Metagenome / Metatranscriptome | 201 | Y |
| F058137 | Metagenome | 135 | Y |
| F096878 | Metagenome / Metatranscriptome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334979_0000761_10820_11017 | F025466 | AGGAG | MFDAVKIQAIVMTYLRAGAAAVLALYLANPNQPLKNYLFAGVAAVAGPVMKALDPKATEFGKGSK |
| Ga0334979_0000761_14283_14414 | F058137 | N/A | MVGKKVRSVRVSDQLWARAMAKAKSEGKSVSEVIVDFLKEYIK |
| Ga0334979_0000761_14415_14579 | F020909 | AGG | MITKRGKQVRAIGIVFLVYVLFHISANLWWVGIDSPNAEFLGWCWGSMSECVVL |
| Ga0334979_0000761_15046_15405 | F096878 | GAG | VGLLINRDPLFSVHNSLNGDVAIYLEERDAALDLVEDVLAAVPMADLEAIENLMITDLKSSDAARMMDKARSAVPDLAIKLASISESEALTLAEQLITAVKYARAMRSQPLTTKLELVK |
| Ga0334979_0000761_15407_15757 | F024097 | GGAG | LANPNGRKGALFETSVMKWLRDRGVSAERLTKAGSKDEGDIVCVVANKTYIFELKNRKAITLPAFWDEAITEAKNYAVARGLKQTPPAYVIIKRRNAGIEKSWVVQDLEQWLGTRD |
| Ga0334979_0000761_22545_23285 | F009529 | AGGAG | MNCTICDKATKNEGACLTCELKVKACLVELPALQYEAGNHLAPARTGSGAVSSERSIGINVNALDFSMATDLLHILHGYEVPIRIGRGLTPPAYIDKEPSIEAEVDATCSFHLAHLDYTLLQPWAVDFASDVYGLHAKGRAAAKKFSEQARRIPCPTDDCKRFVVIDVENLSDEVSCFGCKQSWTVARLVKLAMSNPNRKFFLDVEAISLWLKISQREIYRIVKRNDIEKRGSLYNFGDILKVVQI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |