Scaffold Ga0334979_0004948

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334979_0004948

Scaffold Ga0334979_0004948

Overview

Basic Information
Taxon OID	3300033996 Open in IMG/M
Scaffold ID	Ga0334979_0004948 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9398
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (81.25%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009514	Metagenome	316	N
F034507	Metagenome	174	N
F048999	Metagenome	147	N
F093496	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0004948_7074_7319	F009514	AGG	MTKQQILALQSIGKGIIEAANIDSIGAPSGVIYSALMSHGASLNQFQQIMSTLERHGFLSHDVDANTYHATDAGLQWSKKV
Ga0334979_0004948_7330_7509	F048999	AGG	MITITLHQKTDNDGWKTIKSLPIDSAQWCKIDRSWIDTLMESGSMVITIGHTMYSIDKN
Ga0334979_0004948_7577_7810	F093496	AGG	MTFYQAAIDNFPEDQAAIDADFALSLFETEGSDYYYQWLMKERSSVIHNTFDDNQDQIKRYIDRFNELTADKTRFYM
Ga0334979_0004948_8367_8621	F034507	AGGTGG	MKLEWQNLWDAMEKNPSEWIETTQKMYWDMLESVPPRAQNSRGFLVGEPLSDNAEGYPIYACFKKSGDNYYAKNLTLSEFRGEV

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