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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033996 Open in IMG/M |
| Scaffold ID | Ga0334979_0006466 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8198 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (66.67%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000868 | Metagenome / Metatranscriptome | 853 | Y |
| F001125 | Metagenome / Metatranscriptome | 769 | Y |
| F002245 | Metagenome / Metatranscriptome | 578 | Y |
| F002935 | Metagenome | 519 | Y |
| F011299 | Metagenome / Metatranscriptome | 292 | Y |
| F020168 | Metagenome / Metatranscriptome | 225 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334979_0006466_1395_1544 | F020168 | GAG | MIDIIGSVIAIILIAFLCSPIVLAVYMWNGAKIDNDGDGKEDLPNRWDK |
| Ga0334979_0006466_1737_1961 | F002245 | AGG | MSNLMTVPHTVTFEASIDLDKIPANLLPALLKLNETDLLTMCKEATLHALTESNLLKIANENNTWAEVTIKEGN |
| Ga0334979_0006466_3_179 | F011299 | N/A | DYVATAEILKYASDKMHPALFSKIVNDFAQMFAVDNERFDVKRFHEASGYHVPNFTSR |
| Ga0334979_0006466_4888_5301 | F002935 | N/A | MKGYSGNVLDGKKLAKIANDIYRVQYSNDFSECTVDNLLLIELEEKNVFGDPKYAVLCSEGVGWEQDTYGCIEIPTNIGQMGLWNGRVFISVDTVKSCQTIFKEDVSDYIRTFGSRLDSNCSLWQSKMSVTPATILA |
| Ga0334979_0006466_6502_6870 | F001125 | GGCGG | MGDRANFGFKDSKDNIVFLYGHWAGHRMLENLADAVSAAEPRWQDESYATRIAISQLIKDEWASETGWGITVNELADNEHKVPIIDWKNQTFTLMEEDLKTVVFSTTLDAFVAKYSSQPSMV |
| Ga0334979_0006466_7977_8198 | F000868 | AGGTGG | MSFLENENQMVIDAEYSYIGEQLVEDWVNSNLDEGQLFADYRFAEMCESNYLKGRFNQFYDLKPEDQYYIEWDE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |