NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0009981

Scaffold Ga0334979_0009981


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0009981 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6549
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000220Metagenome / Metatranscriptome1544Y
F096621Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0009981_247_573F096621AGGAGMGLKTVAPPRLPSAPTEYSAQYQEQFMNILRLYFNQINSPIPAIFGSAGVGTPGVVSGLTLAQPSPTTPGQFVISLPTQADFANLRSGDIYYDTSGGTATSYPLRIKA
Ga0334979_0009981_4085_4702F000220AGGMPNEKPNPDDTLSKVLAYVDSPFKLIAILVMGVVAFSGYFLWQNQELLVGAYRENQKMPSIAEDRIEDAASHLFKHTGAVVVAVFKVNPMFGTRVLHRAYTKEGRDKINDGLDIGLFTSNVANNKDVVALMAGEIPCGSYTQAQSEIGLWYIEKGMTYGCRVGVPPDPSRFIGQITVGWAEQPEDMEKIHNLLLIAATMLSRSKQ
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