Scaffold Ga0334979_0015970

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334979_0015970

Scaffold Ga0334979_0015970

Overview

Basic Information
Taxon OID	3300033996 Open in IMG/M
Scaffold ID	Ga0334979_0015970 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5105
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006988	Metagenome	360	Y
F105190	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0015970_1032_1502	F006988	AGGA	MTSRPYTGNKDAVHAAKREGTKVFVDYCCYLFGVTNIGIFNDRNMVGTTPPKKSVHATWRAVDLKGTQEQRFKLIDFLFTHRDILGIEEIHDYAGTYKNNPKGWGAGYRCDRDAWRVYDKNTIGSKGAQWVHVEVSPLLADHPDVVHHAFKTIFDA
Ga0334979_0015970_2650_2856	F105190	GGTGG	MMCELCKAELTAFDIRMQDLLQGICLNCGKTGDWLHMTPEESRRCAELHKWANMTNAERTAYDRNRGN

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