NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0041240

Scaffold Ga0334979_0041240


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0041240 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3028
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005088Metagenome / Metatranscriptome412Y
F027844Metagenome / Metatranscriptome193Y
F068843Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0041240_1335_1448F068843GGAGMSYTEEDIAFLIKVGQITEAPKKETKAPAAPIEKTEE
Ga0334979_0041240_1881_2138F027844AGGMARLKITRADGSVSEHQITPRIEYAFELYAKKGFMKCFRDEEMQTHLYWLSHECLRASGETVPVFGPEFLDGLSKVEVMDDLPSQ
Ga0334979_0041240_2138_2317F005088N/AMGRGSFGYLVAQLAIETHIPPQYLLDLDIEMFRNLLAVLNDRAKEAQNASRGKRRTRHY
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