NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0058055

Scaffold Ga0334979_0058055


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0058055 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2491
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F001019Metagenome / Metatranscriptome804Y
F007468Metagenome / Metatranscriptome350Y
F022414Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0058055_1681_2061F022414AGGCGGMSKTQEIKVAEAIVNLSDDHWFNPAIFGRYLAEQPLYTVDRIMEMVAYIISEQAKVYELLRIKGTSSEGLLLANELNECIKAYQEITVISNLKLPKPTTYNIKREVKVEPRVFGYTDEDKNPFDQV
Ga0334979_0058055_408_698F000263AGAAGGMTPEDIGLPPHLQRMVNADVTGLDIIHGELKNLMLIAEQELADAQAIEDETEEAMDSMERTRCEGVMDTLVELYNLTYQLSFAIGIREENKKDGHI
Ga0334979_0058055_62_253F007468GGAGGMTTQTKSSYFLEYMKLHLISLNQDLEADYNVQSKINIQGQIMATEHLLSVATDIMNNNERVYG
Ga0334979_0058055_698_925F001019AGGAMSYEPSLEILEVEYSCSPGGIDLFEVYDKSDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEA
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