NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334979_0118279

Scaffold Ga0334979_0118279


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0118279 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1632
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F015702Metagenome252Y
F017972Metagenome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0118279_1188_1358F015702GGAGMIREVELEYTVYNLVRLSEKVWGENAIEYLAGRLESVITYNQMKVLIDSLKEEANE
Ga0334979_0118279_1351_1512F000821GGAGMNEEYLRAKFNLCLDQAEKNIKEEEIALAIKNLERANSAMARLFGIDEGDNND
Ga0334979_0118279_276_584F017972GGAGGMRTRHLSLVTQRHSVTTTTKSNVCSPYGPVNPASTTWLAQETLRANQEARLLELLNSLESVVDNLNFKSFTAYDTLVTAMEGVRVALLATPTDEGGTDADRC
Ga0334979_0118279_935_1195F001477AGGAGGMSNVYTIHPPKSDLILFYEIVEPEGRGERVRWGGGDAKSAIQWLYLAPVGSRILVSAWDSDEEDAHLVGQTIDITELIQQAREVGL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.