Scaffold Ga0310131_052776

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310131_052776

Scaffold Ga0310131_052776

Overview

Basic Information
Taxon OID	3300033997 Open in IMG/M
Scaffold ID	Ga0310131_052776 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-FT7-sol
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	925
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)		Depth (m)	2896
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018880	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310131_052776_1_414	F018880	AGCAG	MTAWSAEYRVKINGYTVTGATLSGLTITSGRTDIYSQPVAGYCNLTLIETAESSVPYEINDPISIEVQDSNANWVSLFGGFLTDVSITVQSSGAIATSQRIQIVGVGALARLNRSVFTGNLPHEFDGTRIYNLLSTAL

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