Scaffold Ga0334926_000088

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334926_000088

Scaffold Ga0334926_000088

Overview

Basic Information
Taxon OID	3300034004 Open in IMG/M
Scaffold ID	Ga0334926_000088 Open in IMG/M
Source Dataset Name	Biocrust microbial communities from Mojave Desert, California, United States - 22HNC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	51214
Total Scaffold Genes	60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (63.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	34.3778	Long. (^o)	-117.6098	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005661	Metagenome / Metatranscriptome	393	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334926_000088_6763_7428	F005661	AGGAG	MQFRVAQTSGAAHVAKEFDYHSGPLTPEMVNEAGRKAKILDLQKQLRTAYNRHDAKIRANKVELERLTLEAIESGLTDKAQIDKYVGKAIFAGAKHDKHIATLSHELQQQLNLVKVEGASEVTLANANFRQRLLLIKANHTAKGQIQLHSFQQSLKAIQASPQQAIAMQQKRSAFNAYINAKDYDPIPPVPSGSAGGNSPITSNNGKGFLGGLFDFFSGKK

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