NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334930_000527

Scaffold Ga0334930_000527


Overview

Basic Information
Taxon OID3300034005 Open in IMG/M
Scaffold IDGa0334930_000527 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 26HNS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7391
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001042Metagenome / Metatranscriptome794Y
F038520Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0334930_000527_4414_4704F038520N/AMKQKGSKHGGSRTGAGRPHKWQGGETKLVRIPVAYVGKILQIVAYMDANEGQLPTDIAFFIEGEDFPPPEYDDSRELPYPNFDRYHKRYRNSTWNS
Ga0334930_000527_7017_7391F001042AGGTGGMTTSHLIGENFASDVPKDFEANTDGKIVIDKLLVNKLTELLITSIYSVHTSRRSEIFLTSLDMHLAEYSISNRNDTVCREFTEKSALLLESYQEDVPKSLGKAESCLGEAIDLINLIVSASEAEA
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