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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034012 Open in IMG/M |
| Scaffold ID | Ga0334986_0000095 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 68541 |
| Total Scaffold Genes | 115 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (37.39%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005382 | Metagenome / Metatranscriptome | 402 | Y |
| F021068 | Metagenome / Metatranscriptome | 220 | Y |
| F022611 | Metagenome / Metatranscriptome | 213 | Y |
| F034858 | Metagenome | 173 | Y |
| F036146 | Metagenome / Metatranscriptome | 170 | Y |
| F057999 | Metagenome | 135 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334986_0000095_22099_22263 | F036146 | GGA | MNVCRTFLITTADGQRIALGAISPKQAEHFLAVLRPDLKVALVEEIKPLPEPEP |
| Ga0334986_0000095_26192_26470 | F005382 | N/A | MDKTSFIRQFIYRAGPSIVGVEFVKQDGSVRTLRFNPRDSKEIKGTGKPSTKPSIIRCRDFSIARNEGQGAWRSFDCERVTKITANGQTVCF |
| Ga0334986_0000095_28990_29292 | F057999 | N/A | MTALALVFTLDSFRPTQGQWWRHDTSRNIERRVKLVAAHLGFWLWTADFRDAHSGRILSQRFFCTKPSSEEPVALFENPDDRQRWMEMQWKAQEEANGNR |
| Ga0334986_0000095_34407_34598 | F022611 | N/A | MWGLPERQPFNIGPYKLWPCFSRPEFQWFAAVDGKPLYFRTSNEAKLFFNDLLAVDDPEGLCD |
| Ga0334986_0000095_45789_46466 | F034858 | N/A | MRFCISTCRKFATHTLQVIVPSLLKNGITKERILIVNGGWEDSLTIADYEGVPMLLTPQNSFEYTPLIEIVDNNIHSDYWFLLHDTCIAGPLFYELALSLPVDSPEKVALKGTPSMSIGLYRMDYLLRHKDRLMAIRNTDCSPEALQRWKQWGVPNEDYMLWKLNDAPTHVYHPDRHGPDEWNYQGHSDAYGTGFARRIEYFPQLDLYKAKSNWQGVQPVLCLDI |
| Ga0334986_0000095_48476_49192 | F021068 | GAGG | MKPSDCTIYAVCIQNEKVRYEAQSRIVPILGGAWNTVDAERRALREQGYVFDDEGAFLSSLNRRWGELSCVHWMLLNAEEANIGNAQYRRNWIEPKSGWYAEDVLYVPEPAVFSCTLEQQFYGGHSAFDAPAITRELADTGAWAFTREEIDKLWAQNLFIGCNMARGPKQYYKQFMTTLFVCLLPIWEKHKEHFLSIEDYDKRALAFIAERLLTGLVLYRDKFFPGITIETAPIGFIH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |