NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0001108

Scaffold Ga0334986_0001108


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0001108 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23509
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (71.74%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029722Metagenome / Metatranscriptome187Y
F033407Metagenome / Metatranscriptome177N
F034912Metagenome / Metatranscriptome173N
F077243Metagenome / Metatranscriptome117N
F079987Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0001108_15170_15385F077243AGCAGMEIVNRGDAMNLNEVAAMSAAQDIIEQAQSTSALEQRALAIVDLSVELHRKAIDLRLQAEEILKEIRYGLK
Ga0334986_0001108_4883_5149F034912N/AMKHNLPIVKVVWEDACHDTLGWGDSPEKAKDFQVPLVVSIGFLLAETKQGVKICQSLTDDAIAQSLVIPRKMIQSIERGAWSEKKGRR
Ga0334986_0001108_6928_7176F029722AGGAGMASWINLIKQVKSSDVEEITAAYNQALPFVVQDWAKMILKLAKSKRLPIIEKIDRIHGDKIGQMVRDEVTSQHKDLRKPAKR
Ga0334986_0001108_9008_9361F033407N/AMNLNTFEEGLLDSIQTERCKKLLWSVIQLAVDDACKAPYKTRPTDDTITALRFLFGDLHESGLDNYLMWLDVDSKEFKRRMVNAMFSERHDKFTDFERRAFRANYNWYLRNEINPND
Ga0334986_0001108_9371_9721F079987GAGMQEIVKRTIQQAIKLLDASGVKYKIIDQDGNEFGTLTTSSPKKTNKNYVHPPGTMFRYYHPLIEDMKIGDVVAIESGEFTTKSLQGAITSWATATWGKGSYTTCVVGSSVQILRCL
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