NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0001109

Scaffold Ga0334986_0001109


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0001109 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23493
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (78.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025009Metagenome203Y
F088417Metagenome109Y
F096599Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0001109_11324_11533F088417AGGAGMAERIYIVHGPQGIRLVKASLRQQALSHVANSTFTIHVASQDDLVAEITAGTKIEQYKAEQADLALDGE
Ga0334986_0001109_15795_15989F096599N/AMSKNIETTIYTEDNVRISVDEWDDGGVWLGLQGRGCSMHCTLTRAEAEQMLKNLQAVLSKEVTA
Ga0334986_0001109_18019_18222F025009GAGGMKAQKVKWFTGNKGKVGIAKVLTDDGDTEYRISVVDGFLEHMDVQQVVAWGAYFPFEAGDPLFMEDA
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