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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034012 Open in IMG/M |
| Scaffold ID | Ga0334986_0004338 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10982 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (65.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001326 | Metagenome / Metatranscriptome | 721 | Y |
| F001872 | Metagenome / Metatranscriptome | 623 | Y |
| F002421 | Metagenome / Metatranscriptome | 560 | N |
| F003964 | Metagenome | 459 | Y |
| F010535 | Metagenome / Metatranscriptome | 302 | Y |
| F014971 | Metagenome | 258 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334986_0004338_2099_2497 | F002421 | AGGAG | MANCTICKEQIAYPEITGKTHFVCDGRVPARKNAPFIEGMLASQSSADARWTRPQQNEVDAAIVQVARTKGFFTSDDIWKHLGDQFPVTKGIAGRLNAAARRGIIRNTGELAYANRGGAHDHAQRLSVWAGI |
| Ga0334986_0004338_3288_3464 | F010535 | AGGA | MTEPQIVDYSVYIGVMDNGQEILVQIFTNPDSGKYLQGQIAFRSHASSWGVPIPLEKR |
| Ga0334986_0004338_3493_4035 | F001872 | N/A | VAIAKAKAGVPNARDYIGNADGASPAVRAGMNEWIKQAIAASNGALWNNGSWGQRDMRGKPGSLSVHATGRAVDLSYRKSEKNPKAGRKEALLFIDKLVANANDLGLQCILDYFPEPQGRAWRCDRQAWQKYEKPTIHGAPGGDWFHIEITPQAADSVIWVKAAFLKVFGEIPPKDIPIP |
| Ga0334986_0004338_4656_4793 | F014971 | AGGA | MTYEEAVAMYPQDEVFIQVDDETRTMTDEEYAAFINQQVNAQPAP |
| Ga0334986_0004338_7931_8443 | F003964 | GGAG | VAGVSAKIEVVGLKDALKTLNKIDKSLRREITKDYKRIVKPVIDDANALVPTGVPLSGMSRNWKTRSGFQMLPWVPSMKQKIAAKINTRAVKEYQGNTTNVGTFSIQWKGATGTMFDMSMAGSLGRALTARYGNRSRVMWKAYEQRQSDVMSEMEQLVKRVMDEANRETA |
| Ga0334986_0004338_9732_10364 | F001326 | N/A | MATYTVTNKYLIDNFAVLQLLTPSEIAVGSSITVASVDATFNGTYTVRALPQYLFLGVDTQGDLLYDYQIPIADQVLYAKTASDVERVAASGTVTYEPVCTWVTAAQVMTYLGITIINPSDDYTLLTQSVSAGNQFCYRRRQESGYIDSLTTSPGGDATLGTLMYCAALWRSRGSIESTYATFDGMGSAPQQSLTPIVKQLLGIPRPAVA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |