NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0021361

Scaffold Ga0334986_0021361


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0021361 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4405
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015072Metagenome257Y
F019289Metagenome230Y
F022866Metagenome212Y
F049573Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0021361_1009_1215F019289GGAGGMAEPLSDAYLQQCEFDARRYQGAYTGTAGTLAGHVMRLLAELSRVKGRLAVTIAQRDEMPSLSHIRGD
Ga0334986_0021361_2402_2638F049573GGCGGMVVALPEGKRLISTAEAAKRLGVTMGRVRQLGLLGVKKGGLTRYWAAPTALVFDEAEVERLAKAKAKTGRPRGGFQAN
Ga0334986_0021361_2731_2883F022866GGAGMNRHLDNLIPALVLVRIGQELGCDSNAARAIHDLLELLTAIPFRFLFAPF
Ga0334986_0021361_2965_3270F015072N/AMYLATPTPGENVMNDPHDREYAAAVAYMGEHTCSSGTTRYRDGKLVTTYAVGNRIYFIERGHTLAGVVVEVLTEDTYHVRRHVPDHGNLHYAVHADQITPY
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