NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0072780

Scaffold Ga0334986_0072780


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0072780 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2115
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008991Metagenome / Metatranscriptome324N
F014823Metagenome / Metatranscriptome259N
F017436Metagenome / Metatranscriptome240N

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0072780_1720_2115F014823N/AVREGSQAADELTSVVAQIIYKEIKRRKEFRSLLMSVEQTLSTSMRRVHRKVIELRKENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVHRQARSEKEIENLQSTAVAEKKVDLPESLEIL
Ga0334986_0072780_2_382F017436N/AMDGQYRKMFRETVITVQRLSVSAAVFTVTERRNNIVPQKTTTRCRTVVKMMINEIKDDIAPLSRNSDRYRFKRIQLALYVLLSQALSIEGSNERYKALKDMYYFMDRLKSTTFDEWKNFLITGSTEF
Ga0334986_0072780_366_818F008991N/AMITEQVEKKLEAVLKGKYDNRTIWMYYKASLQMLRDILENLIVCHHTTHSLAEKDLYYEQNKVQIVDWIQWIQNRTSSDKLVDLDRLLSKLIKDKAENLVEALTEENPSDRMTTLSMLQMSIQIALFMETQQLLKSPIVIQFCEENGWAV

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