NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0089538

Scaffold Ga0334986_0089538


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0089538 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1863
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025030Metagenome / Metatranscriptome203Y
F064723Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0089538_1298_1861F064723N/AIKQARLDNLRRLQAQTQKKVTKKGSLLAIYNLAEAVVELDDLMKKITIDKRKEIAKAAEPIALAAYKNQVPISKKPHKYYVKGEGLVYNIMPGNLQRSIKIISDVKNLKKATSSIGPLYQPQGKGATLGSEGKTDGFYAHMIYGSTKAWVRKVKNKAERASQMAVIQKMSQEAIRVAKEYPRKFWEI
Ga0334986_0089538_662_910F025030N/AMKLRLLKEWNGKQPGNTGVFLSEYGEQMIKDGIAELLDNDFVVEDMPKKEEVKQDPVYIPVFVNPEHFQNEEEENITKPKNK
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