NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0126009

Scaffold Ga0334986_0126009


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0126009 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1503
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027417Metagenome194Y
F036551Metagenome169Y
F059896Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0126009_1270_1503F027417GAGMRGGGAVSYDYRVTFITDYLTITTNVCLELDDTTGNLSGEAYEQAVINGMNNIEDEIGKIDETVINDITVTLILDDEE
Ga0334986_0126009_321_491F059896AGGAGGMDKCDKCESMARVTVSGFIVARYLCARHAAELCASVEDAEGFNKFSALIEGDRVLQ
Ga0334986_0126009_903_1109F036551AGGAGGMDTMDLLRALSTEARECELCGSGSWRILHAGDESNCECEGECLRVCDNPLIEDGCDGVAILINEEESK
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