NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334991_0000730

Scaffold Ga0334991_0000730


Overview

Basic Information
Taxon OID3300034013 Open in IMG/M
Scaffold IDGa0334991_0000730 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30626
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (5.41%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041191Metagenome160Y
F049410Metagenome146N
F068425Metagenome124Y
F071219Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0334991_0000730_1317_1502F049410GGAMTRGTRYTNGKEVITFVKIDFIAIGGRKIDHVYFRRKDKVDLIMPLLEWNIKGKFEWLIT
Ga0334991_0000730_1840_2361F068425N/ALLVIALSKCAKEQPKTIPFDYKTEAELMKKQFGIEQAILLNQLESATRRLQSAVNAKDSIRKREISLSNTNIALMKKLRQPLPKECDTVFVLCDEIINVKDSSYAALFTAFQSCVDVSTIKDSLIVAYKAENVTDSTLLAVSKQETKQQRKGKVAAWCVGGAMFILWLVVGLK
Ga0334991_0000730_2604_2813F071219N/AMIHQENPDNSILVIITSVIIQAGVWTSDWFGNVNLTGIYDTIYDCAKLGALIVSMWASYRVAKKNKNNE
Ga0334991_0000730_2_409F041191N/ALYKPTKLTCDIIVPDLEKSHGVQKVIGFSRGWHHYNSIRLGIRKEDTYIVLYFYAYINGKRVIQRLGRFEIGEQVSVTLQWGYYIECKANDKYAFRVAPKRCFPIGYQLYPYAEKDGVRGVEVPIEIQISNLCVS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.