NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334991_0014708

Scaffold Ga0334991_0014708


Overview

Basic Information
Taxon OID3300034013 Open in IMG/M
Scaffold IDGa0334991_0014708 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4796
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (85.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F000808Metagenome / Metatranscriptome882Y
F019325Metagenome / Metatranscriptome230Y
F024314Metagenome / Metatranscriptome206Y
F048982Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0334991_0014708_1885_2061F048982N/AMSVELRDVLAVTRQIRGNDRDSGAHYLLGYLWANTSEHEKQRIAELFTNDLLEQEKNK
Ga0334991_0014708_2503_2658F019325AGGTGGMTTLTETLFSTIVHDFHNGGVKSSYGLDAYTRKEILAYLLRSKGCQCINCL
Ga0334991_0014708_4053_4196F000447GAGGMGYVEIFRFDNEGAGWVDLESATPDELFNLEVGLLNEGALFTTKEND
Ga0334991_0014708_4196_4405F000808AGGAGMEYNYSITFSYDGELFSTMRTADLMEAVDVWNKCVDYGHAEQYATYNLSDPTGKMYTKTFYRNGEVTVK
Ga0334991_0014708_913_1083F024314AGCAGGMSNTTEELTPDQAQAILLFQIEQKLRFIIANQVEEKFHGMYHNESHDIAQFIRNMS
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