NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334991_0015051

Scaffold Ga0334991_0015051


Overview

Basic Information
Taxon OID3300034013 Open in IMG/M
Scaffold IDGa0334991_0015051 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4725
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031491Metagenome / Metatranscriptome182Y
F066792Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0334991_0015051_4208_4495F066792N/AMIKENPSIAAFKVWVFPTLVSLVSLLIWNDVNEIKSDVKLLMAQSNIDKTRIDNLERQIFKSANLPTTPVKHLGDYQELVAILPDNKLKTVKYDF
Ga0334991_0015051_757_1344F031491AGCAGLDKNFNILQNTKKCKMTQEEIKELKKVKLENIRDYHQKLIDNLEIPRSDFNMKMAFYDKQGRNVVGIFASEFKKEKGFYFELITRDLEPLDAERTVYKIPSNSAFEEEFELNEKGSYLVPLEELRIVNTTSVAISGASAISDKPSFKPPIAAYKAPGAMEDAPYTEITIRDYYAIQTGKPVSSKTWLNDLIKSNK
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