NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334991_0044366

Scaffold Ga0334991_0044366


Overview

Basic Information
Taxon OID3300034013 Open in IMG/M
Scaffold IDGa0334991_0044366 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2366
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006112Metagenome / Metatranscriptome381Y
F010245Metagenome / Metatranscriptome306Y
F053806Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0334991_0044366_1281_1604F010245N/AMMKTKRTARKDCNYVIYVAEHNGSAYIGLTRKGTVSIAKAVKERWRKHISRARHEDRDWELYKYIKSGNWDGWTHTVLDIVRGRAEAYAYERELVKHMEPELNDQYL
Ga0334991_0044366_1_243F053806AGGAGMTRYYDELAVYERNGFDIIVDKSYEDLDPKDCFDDDCFNIKEMYSDIECGNLDWFMLRVRVMVENIELSSEFLGGCLYKDA
Ga0334991_0044366_650_931F006112AGGAGMKQNYTMYCYKKDRRCKTGERLFSTTVWQDRTLEGLEREMRDMSRDLYPGTDWRFEFVPTMKTVKNLMSGKDIQIPHDTPRSCDPSSELYWSM
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