NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334991_0258553

Scaffold Ga0334991_0258553


Overview

Basic Information
Taxon OID3300034013 Open in IMG/M
Scaffold IDGa0334991_0258553 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)723
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009679Metagenome / Metatranscriptome314Y
F052591Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0334991_0258553_1_531F009679AGGAGMALITLSELKSVLGIGDIYADPIVQAVADSAENIILSYLIFDDVSIAGVSLTSNVARFYCYDNTFVVGQALTVSKCGAPFDGSRTVTATGIDEYGVSFFEAAITNANISKRSVIPNGRAVLTSQAALYDTTPEVREAALAVACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVS
Ga0334991_0258553_603_710F052591N/AMSTNVVTSGEIETMLYGYLAVGVLVAGGVRRFNLT
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