NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334985_0000172

Scaffold Ga0334985_0000172


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0000172 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46857
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (20.83%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059904Metagenome133Y
F073559Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0000172_13801_14160F059904AGGAMKLNTTIKLPTYSCKIIISIVDSVSVEAERIYKRCKIKEDFGGEAEGALIMPDMDVYYLLLGNKYLTHNTIAHEIFHAVVRVTEDRGIVDEEAQAWLAGHLTAVTYKFLEKKKLEIKHG
Ga0334985_0000172_4160_4672F073559N/AMEKISLKLFEFYNLDAELNGLTNQQTGEKIASGLIQEKLSLVTKYWLTELGKKVAAEKAAVEELKNDLIKKYGKEDDKGGISIPMVIDELDEEGQPKKDLDKDGNWFTKKVINPEFQSFELEFNNLLQTEKELEYKAFTLEDFEKVETSENYGTFFKLIKVEETKVVPMN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.